Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015829783.1_cds_XP_016503914.1_17414
CDS Infomation

[gene=LOC107821949] [db_xref=GeneID:107821949] [protein=carotenoid cleavage dioxygenase 8 homolog B, chloroplastic-like] [protein_id=XP_016503914.1] [location=complement(join(12633..12778,12966..13068,13176..13365,15010..15203,15274..16017,16705..16998))] [gbkey=CDS]
Sequence

ATGGCTTCTTTTGCTTCTTCGGCAACCAAAATCTATTGTACCAATATCCTTTCTCATGAC
AGGTTTGATCATGGCAAAGATGAACCTTATTTTGGGAAGGTGAAAATCAATGAAAAAACC
AAGAAAAATCTAGACTTGAAATTGGTTACAAACGTAGCCAGCCAATTGCCTGTGATTGTT
CTACCACCAGATGAAGTGGTCAAGAAGGAGAAGAAGCTCGCTGCATGGACTAGTGTTCGC
CAAGAAAGATGGGAAGGAGAGCTCGTCGTAGAAGGCGACTTACCACTCTGGCTGAATGGT
ACGTACCTGAGAAATGGCCCAGGACAATGGCACATAGGGAACTACAATTTCCGGCATCTT
TTCGACGGCTACGCCACCTTAGTCCGTCTTCATTTCGAAAACGGACGGCTAATAATGGGT
CACAGGCAAATCGAATCAGACGCATACAAGGCAGCAAAACACAACAACAAAATTTGTTAC
AGGGAATTTTCCGAAGTACCTAAGCCAGACAATTTCTTGTCCTACATTGGTGACATGGCC
AAATTACTCTCCGGCGCGTCTCTAACCGATAACGCCAACACCGGAGTCGTTAAGCTTGGC
GACGGCCGAGTCGTTTGCCTAACGGAGACAATAAAAGGATCAATCGAAATTGATCCGGAC
ACACTTGACACAATAGGGAAATTCGAGTTTAGTGATTCGTTAGGCGGGTTGATACATTCG
GCTCATCCAATTGTAACGGACACTGAATTTTGGACGTTGATACCAGATTTGATAAATCCA
GGATATTTAGTAGTGAGAATGGAAGAAGGAACAAATGAGAGGAAGTATATAGGTAGAGTG
AGTTGTAGAGGTGGACCTGCTCCAGGATGGGTCCATTCGTTCCCAGTGACGGAACATTAC
ATTATTGTGCCGGAAATGCCACTAAGGTATTGTGCCCAAAATTTATTAAAGGCTGAGCCC
ACACCACTTTACAAGTTTGAGTGGCACCCTCATTCCAAAGGTTTCATGCATGTTATGTGT
AAAGCCAGTGGCAATATTGTGGCAAGTGTGGAAGTGCCATTATTTGTGACATTCCATTTC
ATAAATGCATACGAGGAGAAAGATGAAGATGGCAGAGTTACTGCTGTTATTGCAGACTGC
TGTGAACATAGCGCCGACACCACCATCCTTGACAAGCTCCGGCTTGAGAATCTTCGGTCA
TTCAACGGCGAGGACGTCTTGCCCGATGCAAGGGTTGGGAGATTCAGAATACCATTGGAT
GGGAGTCCACATGGAGAGTTAGAAGCAGCATTGGACCCAAATGAACATGGGAGAGGCATG
GATATGTGCAGCTTTAATCCTTGTTATTTAGGCAAGAAATATAGATATGCTTATGCTTGT
GGTGCTAAGAGGCCTTGTAATTTCCCCAACACTCTTACAAAGATTGACTTGTTTGAGAAA
AAGGCAAAGAATTGGTACGATGAGGGAGCTGTGCCTTCTGAACCATTCTTTGTGGCTCGA
CCTGGTGCAACCGAGGAAGACGACGGAGTTGTGATCTCAATGATCAGTGACAAAAATGGA
GAAGGATATGCTCTAATATTGGATGGATCCACATTTGAAGAAATTGCACGAGCAAAGTTT
CCTTATGGTCTTCCCTATGGACTGCATGGTTGCTGGGTTGCAAAGAAATAG

Peptide Sequence

PEP ID

XP_016503914.1
PEP Infomation

PREDICTED: carotenoid cleavage dioxygenase 8 homolog B, chloroplastic-like [Nicotiana tabacum]
Sequence

MASFASSATKIYCTNILSHDRFDHGKDEPYFGKVKINEKTKKNLDLKLVTNVASQLPVIV
LPPDEVVKKEKKLAAWTSVRQERWEGELVVEGDLPLWLNGTYLRNGPGQWHIGNYNFRHL
FDGYATLVRLHFENGRLIMGHRQIESDAYKAAKHNNKICYREFSEVPKPDNFLSYIGDMA
KLLSGASLTDNANTGVVKLGDGRVVCLTETIKGSIEIDPDTLDTIGKFEFSDSLGGLIHS
AHPIVTDTEFWTLIPDLINPGYLVVRMEEGTNERKYIGRVSCRGGPAPGWVHSFPVTEHY
IIVPEMPLRYCAQNLLKAEPTPLYKFEWHPHSKGFMHVMCKASGNIVASVEVPLFVTFHF
INAYEEKDEDGRVTAVIADCCEHSADTTILDKLRLENLRSFNGEDVLPDARVGRFRIPLD
GSPHGELEAALDPNEHGRGMDMCSFNPCYLGKKYRYAYACGAKRPCNFPNTLTKIDLFEK
KAKNWYDEGAVPSEPFFVARPGATEEDDGVVISMISDKNGEGYALILDGSTFEEIARAKF
PYGLPYGLHGCWVAKK

Transcript Sequence

Gene sequence data has not been registered.